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All About Fructose Malabsorption

Green apple

We all know that excess fructose (sugar) is metabolically dangerous. For most people, small amounts of fructose are totally fine – nobody ever got diabetes from eating too many blueberries – but everyone from the low-fat vegans to the high-fat strict Paleo eaters agrees that sugar overload, especially from refined sugars, is not great for you.

But even if you’re not eating enough of it to give you a sugar rush or any extra calories, fructose can cause a whole different kind of problem called fructose malabsorption. If you get stomachaches, diarrhea, or other digestive symptoms after eating fruit or honey, this may be the cause – here’s how it works.

What Is Fructose Malabsorption?

Fructose is a simple carbohydrate, sometimes referred to as “fruit sugar” because in nature, it’s found mostly in fruits. After you eat a food containing fructose, some of the fructose is absorbed by special cells in your small intestine.

Healthy people without fructose malabsorption can absorb around 50 grams of fructose at a time. But for people with fructose malabsorption, the cells in your small intestine that would normally deal with fructose don’t work properly. The upper limit to the amount of fructose that these people can absorb is much lower (around 25 grams or even less; some people react to as little as 5 grams), to the point where you could be pushing it with a big cup of sugary soda, or a Paleo treat based on a lot of honey, dried fruit, fruit juice, or other fructose-heavy foods.

Since it’s not absorbed, any extra fructose concentrates in the gut. The inability to absorb that fructose wouldn’t be such a huge issue – it would just come out the other end – but there are two huge problems with fructose just hanging around in your gut for too long:

Dried fruit

Dried fruit: not the best choice for people with fructose malabsorption.

If you get gas, bloating, or painful diarrhea after eating a lot of fruit, agave, or other high-fructose foods, you may have fructose malabsorption. But on the other hand, you may also not.

Fructose can cause digestive symptoms that don’t have to do with malabsorption, too. (The gut is complicated. Sorry.)

Nobody’s quite sure how many people have fructose malabsorption, since the tests for it aren’t very good, but it’s not rare, especially among people with other gastrointestinal disorders. If you have noticeable gastrointestinal symptoms after eating fruit, honey, agave, and/or fruit-based sweeteners, fructose may be an issue for you.

Living with Fructose Malabsorption

So what do you do if you really do have fructose malabsorption issues, or if you suspect that you might and want to do an elimination diet to check? The obvious answer to all of this is to limit fructose in your diet to a quantity your gut can handle. Just as a general principle, if eating a food gives you horrible gas and diarrhea, it’s typically a safe bet not to eat it. Studies have shown that a fructose-free or fructose-limited diet does actually help treat the symptoms and often provides considerable relief.

The keys to a diet for fructose malabsorption:

This study came up with a list of “favorable” and “unfavorable” foods for a fructose malabsorption diet that helped their subjects a lot. The list is based on the foods’ total fructose load and the amount of fructose in excess of glucose:

Chart of good and bad fructose foods




Obviously not all the foods on this list are Paleo-friendly, but they give you a good idea of what to eat and what to avoid.

Addressing gut flora imbalances may help with other digestive disorders, and it’s always a great idea for your overall health but probably won’t be much use for fructose malabsorption, because the problem is with the cells lining the gut wall, not the gut flora per se. If you have a gut flora overgrowth, that could be exacerbating the problem, but it’s not the root cause and even if you treat it, the fructose malabsorption will stay.

The good news: fructose malabsorption may help protect you against fatty liver disease later down the line. And it certainly puts the brakes on violating the spirit of “Paleo” with endless fruit and honey-sweetened treats, which can only be good for your health in the long run. It is a pain to deal with, but at least it has its rewards.

Summing it Up

Fructose malabsorption is pretty complicated, and it can have the same symptoms as a lot of other functional digestive disorders like IBS or SIBO, even though the root cause is completely different. If you have gas and bloating issues even on Paleo, or if you get bouts of diarrhea after eating sweeteners like honey or dried fruits like raisins and dates, it may be a sign of fructose malabsorption.

The only really effective treatment is to find a level of fructose your body can tolerate and stick with it. On Paleo, a low-fructose diet shouldn’t be a huge switch – you’ll have to give up some dried fruits and treats sweetened with honey and maple syrup, but those things shouldn’t be staple parts of your diet anyway. And you won’t be losing much in the way of nutrition that way – there’s nothing in fruit that you can’t also get from vegetables. Why not give it some consideration; you have nothing to lose but your symptoms!

Photo of Ashley Noël

Hi I’m Ashley, I’m an ADAPT Certified Functional Health Coach

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